rs31747304 SNP Detail

Summary

• ID
  rs31747304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185416312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGCCCTGTC AGTTGTCTTT AAATTAACTT ATTAATTGGT
  GGTTGATAAA GTGTACAGCA CACGAGCTGT TGAACCATCA GAACTCAATT AAATGACTTA
  Y
  CTTTCTAGTT TCTTATTTGG AAAGGCAATG GGGAAAACAT ACACAAACAC CATTTTTCAT
  TCATTCATTC ATTCATTCAT CCATTCATTC GTTTCCATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45065518	mCV23607329	ABI	CRAMUS_MOUSE	f	SNP		C			C	T
ss46734715	NES10661012	PERLEGEN	MM_PANEL2	f	SNP		C	C	C			C	T		T		T
ss146440053	ENSMUSSNP4259827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				T
ss320178625	CHEV_1_187507994	CHEVERUD	SCREENING_POP	f	SNP									C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs31747304					SNP	C	C	C	C	C	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46734715	NES10661012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185416312 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	1555 bp distal
Rr425422	regulatory region 425422	683 bp proximal
Rr425423	regulatory region 425423	871 bp proximal