rs31748448 SNP Detail

Summary

• ID
  rs31748448
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56436349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCCAGC ACTCAGGAGG
  CAGAGGCAGG TGGATTTCTG AGTTCGAGGC CAGCCTGGTC TACAGAGTGA ATTCCAGGAC
  AGCCAGGGTT ACACAGAGAA ACCCTGTCTC AAAAAAAACA AACAACAAAA AAAATAAATA
  ACCCTTAGCA TTAGCCACAA AATTTGGTTG TGGAATCACA ATAAAATTCA GTCTAGAGAC
  Y
  GGGCATGGGT CTATTTCTGA CACACCGAGG AAGATCTGTG AGTTTGAGGT CAGCCTGATC
  TTAGTCAAGA CTACAAAAGA CATTGAGTCA AGACTGACTC AAAAAAAAAA AAAAACCAAT
  AAAATAAAAT TCAGGATAGT AGTGTCTGTG AACAGAAGTC TCTTAATATG CATGCATACA
  CAAAATAAAA ATTTCAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss49771324	NES12385268	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs31748448					SNP	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771324	NES12385268	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56436349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22733	CpG island 22733	1517 bp proximal
Rbmx	RNA binding motif protein, X chromosome	within coordinates
Rr8653	regulatory region 8653	within coordinates
Snord61	small nucleolar RNA, C/D box 61	459 bp downstream
Tssr163454	transcription start site region 163454	1982 bp downstream