rs31748449 SNP Detail

Summary

• ID
  rs31748449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:56434377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGCGGGC CTCCGTAACC
  ATCTCTTCCA CGGGACACAG GGGCTTAAGG AAAAATAAGC ATTAAAATCT AGCCATGGAC
  AAGCTACATT AGTTATACTC AGGCTATAAA AAGGGATTTA ATCGAATATG CTATGGAGCT
  AAGACAGGAA GCTTCCCAGT CACATAATTT CAGTGTCTAC TAATTATAAA TGAGATTAAT
  Y
  GGAATCCATC AATCAGTCTG AAGCATAAGC ATTTAAACAA AACATACTAC TGTGCATTTA
  TGGTGGGAGC ATGTGCGTGT GGTAGCGCTA ATGTGGGTCA GAGGACAACT CTGTAGTCAA
  TATGCTATTT CCACTTTTGT GTGTGAATAG CACAGGCTAC AAAAAACAGT GATTTTTAAT
  CAAATCAGTG GGTAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49771325	NES12385320	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31748449					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771325	NES12385320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:56434377 () rs orientation: forward

Symbol	Name	Function Class
Rbmx	RNA binding motif protein, X chromosome	within coordinates
Rr8653	regulatory region 8653	1823 bp proximal
Rr395083	regulatory region 395083	918 bp downstream