rs31749384 SNP Detail

Summary

• ID
  rs31749384
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136506612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGCACCTC AATGAATGCA CAGCTACAAA GCTCTGATGT TCATGGCACA GCCGTGTGTC
  ATCTATAGCC AAGGGTGGTT GTAAAGATGC TTAGAAATAC CTTTATGTGC CCTGAGGTTG
  GGCTGCACAC CTTTGATCCC AGCCCTTGGG AGAAAGAGGC AGGAGGATCT CTGTGAGTTT
  GAGGCTAGCC TGGTCTACAG AGCGTGTTCC AGGACAGATA GACAGGAGTA TACAGAGAAA
  TCTTATCTGG AAAAAAGAAA AAGAAAGAAA CACACACACA CACACACACA CACACACACA
  S
  ACACACAGAG AGAGAGAGAG AGAGAGAGAG ACTTCATGCC ATCCAATGGC TTCCACTTTT
  TAAGTGTTCC AGCTAACTTA TAAAAAGAAA CTGTCTAGGG CTGGAGAGAT GGCTCAGCCA
  TTAAAAGCAC TATCTGCTCT TCCCGAGGTC CTGAGTTCAA TTCCCAGCAA CCACGTGGTG
  GCTCACAATC ATCTGTAATG GGATCTGATG CTTCTGGGAT GTCCAAAAAC AGAGACAGTA
  TACTCACATA CATAAAATAT ATAAATCTTT TAAAAGGAGA AAAGAAAAAA AAAAAAAAAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45065542	mCV23236766	ABI	CRAMUS_MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31749384					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136506612 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	630 bp upstream
Rr419471	regulatory region 419471	411 bp distal
Rr419472	regulatory region 419472	469 bp proximal
Rr419473	regulatory region 419473	593 bp proximal
Tssr9072	transcription start site region 9072	766 bp upstream
Tssr9073	transcription start site region 9073	792 bp upstream
Tssr13942	transcription start site region 13942	1655 bp downstream
Tssr13943	transcription start site region 13943	1680 bp downstream
Tssr13944	transcription start site region 13944	1707 bp downstream