rs31750310 SNP Detail

Summary

• ID
  rs31750310
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA GTTCCTGCAT ATCTATATCT
  R
  TCTGTCTGTC TGTCTGTCTG TCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45065561	mCV23614862	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31750310					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039913 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr15173	transcription start site region 15173	1927 bp upstream
Tssr15174	transcription start site region 15174	1873 bp upstream
Tssr15175	transcription start site region 15175	324 bp upstream
Tssr15176	transcription start site region 15176	718 bp downstream
Tssr15177	transcription start site region 15177	772 bp downstream
Tssr15178	transcription start site region 15178	796 bp downstream
Tssr15179	transcription start site region 15179	818 bp downstream
Tssr15180	transcription start site region 15180	1023 bp downstream
Tssr15181	transcription start site region 15181	1599 bp downstream