rs31750396 SNP Detail

Summary

• ID
  rs31750396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93731113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT TAGAGCCCAC CAAGAGTGGA
  Y
  TCTGGTAAAC CCTGGATTTT AGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45065660	mCV22922998	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss144960935	ENSMUSSNP6184609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss319844189	CHEV_1_95699968	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31750396					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93731113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi608	CpG island 608	1099 bp distal
Cpgi609	CpG island 609	44 bp proximal
Dtymk	deoxythymidylate kinase	1457 bp upstream
Gm57164	predicted gene, 57164	within coordinates
Gm70929	predicted gene, 70929	within coordinates
Ing5	inhibitor of growth family, member 5	574 bp upstream
Rr29859	regulatory region 29859	within coordinates
Rr366972	regulatory region 366972	1249 bp downstream
Rr396180	regulatory region 396180	305 bp upstream
Tssr8200	transcription start site region 8200	1224 bp downstream
Tssr8201	transcription start site region 8201	554 bp upstream
Tssr13052	transcription start site region 13052	1446 bp upstream
Tssr13053	transcription start site region 13053	379 bp downstream