rs31751289 SNP Detail

Summary

• ID
  rs31751289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85965090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGCTCAA TAACCTATCA CAATCTACCT
  TCTGACTCTC TCTTGGTGAT CTATAACTAC TTGCAAAATG AGTCACCCCT TAGAGCAAAA
  CTGGACTTCC AGGGAATCTT TTAAAACAGT CAGATGCAGG TTTGAAGTCC AAAGAGTCAC
  Y
  ATTAAAAGGT GCTTCAGGTG AGGTATTCCA AGGGCTATTC CTGGTTAAAG GGCTACAAAG
  GCGGACTGTC TCCCCAGCAC ACAGAGGAAA CACAGCAGGA GGAACAGAGA TGGCAAAATA
  CTTCAGGAGT CTCATCCAAA CTGCTGAGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45066378	mCV24373800	ABI	CRAMUS_MOUSE	f	SNP		T						T		C
ss49432429	NES12815652	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	C	T	T		T	T	T	T		T
ss319827687	CHEV_1_87933943	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31751289					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49432429	NES12815652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85965090 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	846 bp proximal