rs31751851 SNP Detail

Summary

• ID
  rs31751851
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4879596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAACTTGTG TTGTATAAGA TTGTCAAACT TTTACAATGA AACTGGGGAG ATGGTTTAAT
  GGTTCAGGGC ATAGGCTGCA CTTAACCAGC CTGCGGGTTC AGTTCCAAGC ACCCACTTAG
  TGGCTTCCAG CTCGCTGTAA CTCCAGTCTC AACAGATCTG ACCCCTTTTC TGGGCTCCAC
  AGGAGTCGCA TATATGTGGT GTATAGGCAT ACATGCAGGC AAAGCATTTG TACACATAAA
  ATAAATATAA AGGTTAAATT TTTAGAACTT GATTTTATTT TTTTTTTTGT TTGTTTGTTT
  K
  TTTGTTTTTT TTTTTTTTTT GGTTTTTCGA GACAGGGTTT CTCTGTGTAG CCCTGGCTGT
  CCTGGAACTC ACTTTGTAGA CCAGGCTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC
  TCCCGAGTGC TGGGATTAAA GGCGTGCGCC ATCACGCCTG GCAGAACTTG ATTTTAAAAA
  AGTAAATTTT TATAAAATAG CCAAGACATT AAGTGATTTT TTTCAGTGAG TTATTAACGC
  CCGTTGCTAA ATACTCAGGA GGTTGAGACA GGCAGTTTTC TTGACCCCCT AGAGTTTGAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45066483	mCV23845296	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31751851					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4879596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	1079 bp distal
Gm37988	predicted gene, 37988	within coordinates
Gm70766	predicted gene, 70766	1643 bp upstream
Lypla1	lysophospholipase 1	within coordinates
Rr407434	regulatory region 407434	1654 bp distal
Rr407435	regulatory region 407435	1452 bp distal
Rr407436	regulatory region 407436	1257 bp distal
Rr407437	regulatory region 407437	956 bp proximal
Tssr5801	transcription start site region 5801	1701 bp downstream
Tssr5802	transcription start site region 5802	1445 bp downstream
Tssr5803	transcription start site region 5803	1086 bp downstream
Tssr10888	transcription start site region 10888	1671 bp upstream
Tssr10889	transcription start site region 10889	1626 bp upstream