rs31753254 SNP Detail

Summary

• ID
  rs31753254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100167744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACTATT CTGCATGATG
  GCGGGGCAAG GGGGGCAGGA TGGGGAGCTA GCTCAAATAG AATAAAGACC CTGCTGTGAG
  TTACATCAGA TTGGCTCCTG ACTGGTTTTG GGGGCATCAC TAACACTTCC CTGGCACAAC
  GGTGTGAGTT CCTGTCCTGA CTTCCTTCCA TGACAGACTG ATGAGTTGTA AGTAAAATAA
  R
  CCTGTAACCT CCCCCCTAAC CTGAAGCTGG CTGAACCAGA CCTCGACTTT GCTGCCACTA
  AGGAGATTAC CTAGGGTGGA GCCTGCCTCC GTAGATCACT CTATTGTTCA GCCACTGTAG
  CTGCTCCCTG CTGGGAGGCC GCCTAGCTAT TCAGGAGACT ACACCCTATC CTGCATGTGG
  TCACCTGCCG CTGGGCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39322520	mCV25252464	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148473229	ENSMUSSNP6077309	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs31753254					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100167744 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	179 bp upstream
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	225 bp upstream
Tssr133109	transcription start site region 133109	673 bp downstream
Tssr133110	transcription start site region 133110	1822 bp upstream