rs31756607 SNP Detail

Summary

• ID
  rs31756607
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19305850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGGACAG CCAAGGCTAC
  ATACAGAGAA ACCCTGCTGA AAAAACAACA ACAAGGATTT GAGAAAAGTC AGGAAGAATA
  TGTCCTAGTG TCCTAGATGG CAAGGACAGC TAAAATTACC CTCTTCCCGG TCATCCTGAC
  CTCAGTTTCT GACCCAGAGA TTACAGTCTA AACCCATACA TCCCAATACC TGGCTAAGCA
  S
  TCTGTTAGCC TGAAGCAGGT AAGGATACTT TTGGTCACAG GGCAACCGTT GGTGCCTCAG
  GGAGAGTGGA GTGAGGCATG GGGAAATGGA GACTGCAGGC CAGACTTTGA AGGGAAGCTA
  GCCAGTTCTG GTGTGGTGAA AGTGGCTCTG GCAGGCCTTG CGCCCTATTC CCTCCGCCTT
  GAGAAAAAGT GTTTGATTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46064875	mCV25052804	ABI	CRAMUS_MOUSE	f	SNP		C	G			G
ss48163406	NES11822115	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C		G	G	G	C	C	C	G
ss148479040	ENSMUSSNP6361097	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31756607					SNP	C	C	G	G	C	G	G	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163406	NES11822115	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19305850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18500	CpG island 18500	1058 bp proximal
Gemin7	gem nuclear organelle associated protein 7	Intron
Rr380485	regulatory region 380485	307 bp upstream
Rr643192	regulatory region 643192	857 bp distal
Rr643193	regulatory region 643193	611 bp proximal
Rr643194	regulatory region 643194	1033 bp proximal
Rr643195	regulatory region 643195	1712 bp proximal
Tssr70933	transcription start site region 70933	1432 bp downstream
Tssr70934	transcription start site region 70934	1447 bp downstream
Tssr70935	transcription start site region 70935	1454 bp downstream
Tssr70936	transcription start site region 70936	1868 bp downstream