rs31759026 SNP Detail

Summary

• ID
  rs31759026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55571359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCCCGA GAGATATCCT
  CTCAATAGGC CGTGATGATG GCTTAATGGG ATGTTTTTAC CTTCTTTACT GAACATGTGG
  GCTGAGCCAT TGCACGTCTT GTGTGAATCA TCTCTAATCA CGAAGCTTCA CAGTCCTCTT
  TATCTCGTTC TACAGTCACA TTCAGTTTTA TTTGAAAACA AAAAACAAAA AAAGTTTTCA
  K
  CACTCCATAA TTTACAGTAA TACAGTTGTG CCTATGATTA AGATAGATTG ATTGGGCTCA
  GATGACAAAA CGTTTAGATG ACATGTGCAA TTTCCAGTTC AGTGTAGACT TCTTTTTTTT
  TTTTTTAATA GAATCACACT ATGTTACCTA GGCTAGACTG GAAATGTTTT TTTATCACCC
  AGGCTGCGCT CAAATTAATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49771883	NES12385210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31759026					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49771883	NES12385210	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55571359 () rs orientation: forward

Symbol	Name	Function Class
Gm10477	predicted gene 10477	567 bp downstream
Gm62070	predicted gene, 62070	260 bp downstream