rs31759988 SNP Detail

Summary

• ID
  rs31759988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37859437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAGTTCCA TGTTGGAGAT CTGGAGGTGA AAATTAATGA
  AATCGCTGCC CCTGGAGCAC GGTATCCACT CCCAGAAGCG GTTGACCCAG ATGTGGGCAT
  W
  AACTCCCTCC AGAGTTACCA GCTCAGCCCC AATCGCCACT TCTCTCTCCA CCTGCAAACT
  GGAGACGACG GAACTATAAA CCCAGAGCTG GTGCTAGAGC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49273354	NES12722978	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A	T	T	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31759988					SNP	A	T	A	T	A	A	T	T	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49273354	NES12722978	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37859437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9937	CpG island 9937	144 bp distal
Cpgi9938	CpG island 9938	97 bp proximal
Gm37165	predicted gene, 37165	263 bp upstream
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	within coordinates
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	668 bp distal
Rr536312	regulatory region 536312	1575 bp proximal
Tssr150727	transcription start site region 150727	630 bp downstream