rs31759989 SNP Detail

Summary

• ID
  rs31759989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37859359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCAGCTTT TCTCCCTGAA
  TCCGCGGGGC GGCAGCTTGG TCACCGCAGG CAGGATAGAC CGGGAGGAGC TGTGCGCTCA
  GAGCACGCCT TGTCTTGTAA ATATCAACAT CCTAGTTGAG GAGAAAGGAA AACTCTTTGG
  GGTAGAAATT GAAATAACTG ATATTAACGA TAATAATCCG AAGTTCCATG TTGGAGATCT
  R
  GAGGTGAAAA TTAATGAAAT CGCTGCCCCT GGAGCACGGT ATCCACTCCC AGAAGCGGTT
  GACCCAGATG TGGGCATAAA CTCCCTCCAG AGTTACCAGC TCAGCCCCAA TCGCCACTTC
  TCTCTCCACC TGCAAACTGG AGACGACGGA ACTATAAACC CAGAGCTGGT GCTAGAGCGC
  ACTCTGGACC GAGAGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49273355	NES12722976	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31759989					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49273355	NES12722976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37859359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9937	CpG island 9937	66 bp distal
Cpgi9938	CpG island 9938	175 bp proximal
Gm37165	predicted gene, 37165	185 bp upstream
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	within coordinates
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	590 bp distal
Rr536312	regulatory region 536312	1653 bp proximal
Tssr150727	transcription start site region 150727	552 bp downstream