rs31760557 SNP Detail

Summary

• ID
  rs31760557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180467511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC TCCACCCCAG ATTCAGCGGT
  R
  CTCCCTACTG TCTATAAACT GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45067298	mCV23508756	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss146384488	ENSMUSSNP7239833	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31760557					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180467511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	600 bp proximal
Gm70644	predicted gene, 70644	46 bp upstream
Lin9	lin-9 DREAM MuvB core complex component	1204 bp upstream
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	745 bp upstream
Tssr10482	transcription start site region 10482	1384 bp upstream