rs31760839 SNP Detail

Summary

• ID
  rs31760839
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37857105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATGGAA CCTTATAATT
  TTATACAATA TATACTGTAT AATCAGTTAC TTAAAAGAAG GTTCAGTATT CATCAGAAGA
  TCAAAAGGCT TGATAATACA TGTGTGTAAT GTCAGCATTT GGGAGGTAAG GCAAGGCCAG
  CCCAGGCTAT ATGAGACCCT TTCTAAACAA ACAAAAGCCC AGAAGGTCAA AAGCAGATTG
  W
  TGTTCCTTGA AGCATAGGTT TTTGAGACTT TAACTGTACA GAGGTTCATA CAATAGGCCC
  CACCACTGAA GAAGAGATGA AAAATGCCTT CCCTCTGTTT CTCCCTGAAA CACTCCAATA
  TATAATTTTT AAAATTAGCA GTAGTAGCTG GTCAGTGGTG GCTCACACCT TTAATCCTAG
  CACTTGGGAG CCAAAAGTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss49273365	NES12723061	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	T	T	A	A		T	T	A	T
ss146961532	ENSMUSSNP2365695	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325585650	CHEV_18_37883706	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs31760839					SNP	A	A	A	A	A	T	T	A	A	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49273365	NES12723061	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37857105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9936	CpG island 9936	1310 bp distal
Cpgi9937	CpG island 9937	1689 bp proximal
Gm37165	predicted gene, 37165	within coordinates
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm53048	predicted gene, 53048	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhga1	protocadherin gamma subfamily A, 1	within coordinates
Pcdhga2	protocadherin gamma subfamily A, 2	within coordinates
Pcdhga3	protocadherin gamma subfamily A, 3	within coordinates
Pcdhga4	protocadherin gamma subfamily A, 4	within coordinates
Pcdhga5	protocadherin gamma subfamily A, 5	within coordinates
Pcdhga6	protocadherin gamma subfamily A, 6	within coordinates
Pcdhga7	protocadherin gamma subfamily A, 7	within coordinates
Pcdhga8	protocadherin gamma subfamily A, 8	1654 bp upstream
Pcdhgb1	protocadherin gamma subfamily B, 1	within coordinates
Pcdhgb2	protocadherin gamma subfamily B, 2	within coordinates
Pcdhgb4	protocadherin gamma subfamily B, 4	within coordinates
Rr536311	regulatory region 536311	1518 bp proximal
Tssr150727	transcription start site region 150727	1669 bp upstream