rs31761536 SNP Detail

Summary

• ID
  rs31761536
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153614863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGGTATGG TCTCTGTTAT AGGCTCTGGG AGTTGCTCTT
  GACAGAGACA TCACCTGGAG CCAGGTCAGG CATCTCAGCA CAGCAGAGTC CAATAAATGG
  S
  TAATGCTAAG GCCTGCTCAG CTCCAGAAGT AGACACTTGC AAAGGTCTAC ACAACTCTAG
  AACATCCTTG AAGACCCTCT GGGCGTGGGG TGGGGTCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45067444	mCV24630843	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss145749106	ENSMUSSNP1080997	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31761536					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153614863 () rs orientation: forward

Symbol	Name	Function Class
C230024C17Rik	RIKEN cDNA C230024C17 gene	1288 bp upstream
Cpgi870	CpG island 870	1046 bp proximal
Gm28513	predicted gene 28513	within coordinates
Rgs16	regulator of G-protein signaling 16	1236 bp upstream
Rr420740	regulatory region 420740	1299 bp distal
Rr420741	regulatory region 420741	905 bp distal
Rr420742	regulatory region 420742	455 bp proximal
Rr420743	regulatory region 420743	1093 bp proximal
Tssr9477	transcription start site region 9477	1227 bp upstream
Tssr9478	transcription start site region 9478	1418 bp upstream