rs31762057 SNP Detail

Summary

• ID
  rs31762057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31470054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATCTTT CCTCTTGATA
  AACTGTATTC TACTTTCAGG CTTGCTTTCC TCTTTGACCT GATATTTCAG TGGAATTTCT
  TTTTTTAAAG CATAGGTGTC CATGTGTACA CATGAAAATG GAGGCCAGAG GACAATCTTA
  AATGTCCTCC CCTCCTTTGA CAAAGAATGC CTCACTGGCA CAGAAGAGTA GACTGTTCAG
  Y
  GAGTAAACCC CAAGAACCTC CTGTTTCTGC CTCTCCATCA CTGAGATTGT AAAAGTGTGT
  TCTACACCCA ACGTGTCATG TGCACTCTGG GGACTGAATC TTGGTCTCCA GCTTTGGCAA
  GAGCTTTATA ACCTGAGTCA TCCAACCCCA TTAAGTGTAG AGCTCAAGCT GTAAAGAACC
  TAACATCACT GCTGATTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39323925	mCV23426748	ABI	CRAMUS_MOUSE	f	SNP		T					C
ss51630418	NES14594858	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	C	C	C	C	C	C
ss147445996	ENSMUSSNP5570015	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31762057					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51630418	NES14594858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31470054 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1987 bp upstream
Tssr133931	transcription start site region 133931	1956 bp upstream
Tssr133932	transcription start site region 133932	1928 bp upstream