rs31764289 SNP Detail

Summary

• ID
  rs31764289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:167197766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCTTGAGC CCTGCTTCTG GTCTTGGGCG CCTCCTACTG
  TGCATGCGTG ATCATGGAGC CTCAGTAATT GTGTACGAGG GTTTCCAATG TCCCTAATGG
  Y
  TCATGTACTT ACTTGAAACT TGGTGCCCCG TTGGTGATGT TTTAGGAGGC TGTGGGATCT
  TTGGGACATA CTTCTGTTAG GTGGAGAGAT ACTCTGGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45067348	mCV22658251	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss146037726	ENSMUSSNP2636503	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31764289					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:167197766 () rs orientation: forward

Symbol	Name	Function Class
Aldh9a1	aldehyde dehydrogenase 9, subfamily A1	1666 bp downstream
Mgst3	microsomal glutathione S-transferase 3	1769 bp downstream
Rr396523	regulatory region 396523	within coordinates
Rr422697	regulatory region 422697	185 bp distal
Rr422698	regulatory region 422698	112 bp distal
Rr422699	regulatory region 422699	55 bp distal
Rr422700	regulatory region 422700	19 bp proximal
Rr422701	regulatory region 422701	218 bp proximal