rs31764440 SNP Detail

Summary

• ID
  rs31764440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:123044601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCTC AGGGATGCCG
  GCTGCGTAGA AAAGAGCTCC TTGCCTTGGC ATGGTACACA ATCCTCCAAG GGATTGGTGT
  GTCCTTTGAG GGGTGAGTGG GTGCACAGGT CACCGTTGCC ATGGTTCCTC CTGCTAGTCT
  GGCTGCTTTG GTTGTGCCCT AAAGGGACAA AGGTGGTGTC TCCCTCCAAG AACCTAGAAT
  Y
  CTGGCTCTGA ACCATACAGG GTCCTGGGAT GAGCAAGAGA TGCCTTCCAC CTGGCATCCC
  TTGACCTATT ACACGCTATC GATGCACCTT CTGTGAGAGC CAACCCTTCC CCAGAACAAG
  CCCCAGGCGG AGAGAGGCCC CCTGGGAGGA AAAGCCCCAC CCTCCATAGC AGGCTCTTCC
  CAGATGAACC CAGATCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47586310	NES11160659	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		C	T	T	C		T
ss322850568	CHEV_8_124841762	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31764440					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47586310	NES11160659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:123044601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr366733	regulatory region 366733			1608 bp upstream
Rr672087	regulatory region 672087			1999 bp distal
Zfpm1	zinc finger protein, multitype 1			Intron
				Noncoding-Transcript-Variant