rs31764796 SNP Detail

Summary

• ID
  rs31764796
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45433195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC ACTCCCCGGT CACTGCAATC
  M
  CATTCCCTGT ACCTTTCTGA ACTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46066398	mCV24380719	ABI	CRAMUS_MOUSE	f	SNP		C	A		C
ss61002955	NES16124294	PERLEGEN	MM_PANEL2	f	SNP	C		A	C		C	C	C	C	C	C	C	C	A
ss149145009	ENSMUSSNP6652225	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31764796					SNP	C	C	A	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002955	NES16124294	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45433195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	within coordinates
Cpgi19089	CpG island 19089	1612 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	187 bp proximal
Rr646577	regulatory region 646577	888 bp proximal
Tssr66636	transcription start site region 66636	39 bp downstream
Tssr66637	transcription start site region 66637	112 bp upstream
Tssr66638	transcription start site region 66638	1560 bp upstream
Tssr66639	transcription start site region 66639	1799 bp upstream
Tssr72472	transcription start site region 72472	1255 bp downstream