rs31768032 SNP Detail

Summary

• ID
  rs31768032
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCGGAAA CGAAGCGATG
  GCAAGAAATA CCCTGAACTG GTACTAGACA GAGCACTGGA TAGAGAGGAG GAAGCTGAGC
  TCAGGCTAAC CCTCACAGCA CAGGATGGTG GCTCTCTGCC TAGGTCTGGA ACCACTGAAG
  TCCACATTGA AGTCCTGGAC ATCAATGATA ACGCTCCTCA ATTTGAGCAG CTTTTTTACA
  M
  AGCACAGATC CCTGAGGATA GTCCAATAGG CTTTCTGATC ATCACTGTCT CTGCTACAGA
  CAAGGACATT GGAGTCAATG GACAGATCTC CTATTCACTT TTCCAGGTTT CAGATGATAT
  TAGCAAAACA TTTTCAATCC ACCCCTTGAC AGGGGAAGTG CGATTGAAAG AACACCTTGA
  TTTTGAAAAG ACTCAGTCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49274175	NES12728352	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31768032					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274175	NES12728352	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	715 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb16	protocadherin beta 16	within coordinates
Rr536278	regulatory region 536278	910 bp distal
Rr536279	regulatory region 536279	990 bp distal
Rr536280	regulatory region 536280	711 bp distal
Tssr5286	transcription start site region 5286	878 bp downstream
Tssr150708	transcription start site region 150708	899 bp downstream