rs31768066 SNP Detail

Summary

• ID
  rs31768066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37750989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTCTCT CAGAAAACGT
  GGCACCAGGT GTAGAGTGTC TGCTCAGCCA TCTGCCCTGG TCCCTATTTC AGTCTTGGGA
  TCAGCTGGCT GTACAGCTTG TACCCATTTG TTCTAGTCCC ATCTGTGCCC TTGGAATGCC
  TTGGGCTCAG GCTGGTGACA ATTCTCCTCC CACCCATCTG TGTACAATTA TTGCCAGTGG
  Y
  CCAGTGGGTG GAAAGAGATT TCCCATTCTC TATTTCTCTT TTCTAAAAAT ATTCCAATCA
  ATTAGGGAAG TAGAAAGAGA TTCTCTATTT CTCTTTTCTC TAATCCCCAT TTCTTTCTAG
  CTAGTCTCAA TCAAACTACT CCTAAGATAT TTGGATCGTT TGTCTGTGAA TTTGATTCCA
  AATTCTAACT AAAGTCCTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49273955	NES12726592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31768066					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49273955	NES12726592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37750989 () rs orientation: forward

Symbol	Name	Function Class
4930517L18Rik	RIKEN cDNA 4930517L18 gene	955 bp upstream
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Gm58529	predicted gene, 58529	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Rr393555	regulatory region 393555	within coordinates
Tssr152982	transcription start site region 152982	802 bp downstream