rs31768240 SNP Detail

Summary

• ID
  rs31768240
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36346670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCAGAAGC ACTTTATTTA ACCCCACCCA
  GTCTTTGGCA AGCTACAAAG AGCGGGCAGT TTTTCTAAGA CTCTAGTTTT GCCTCTAGGG
  AAACCAACAG ACATGCGACA GCAGTTGATT CTTGAGTTTC TTACATCAGC CCCTAGCTGC
  M
  AAGTGGGCGC ACACTACAAC TCCCAGACGT CCTCGGGTCT AAGGGGGCGG AGTCTGCTCC
  GCTCTAGAAA ATAGGATTCA CCAATGGGCG CCCAGAGCGC TGGGGGGGGG CGGGTCCATG
  GGCGGGTCCG CGGGGGAGGA GGCAGTCGAG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45068124	mCV27594617	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss148924900	ENSMUSSNP2984490	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss319688336	CHEV_1_36364434	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31768240					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36346670 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	144 bp upstream
Cpgi139	CpG island 139	within coordinates
Gm70585	predicted gene, 70585	within coordinates
Rr366864	regulatory region 366864	321 bp upstream
Rr395991	regulatory region 395991	within coordinates
Rr409283	regulatory region 409283	within coordinates
Rr409284	regulatory region 409284	25 bp proximal
Rr409285	regulatory region 409285	191 bp proximal
Tssr6253	transcription start site region 6253	138 bp upstream
Tssr6254	transcription start site region 6254	156 bp upstream
Tssr6255	transcription start site region 6255	185 bp upstream
Tssr6256	transcription start site region 6256	470 bp upstream
Tssr6257	transcription start site region 6257	548 bp upstream
Tssr6258	transcription start site region 6258	678 bp upstream