rs31769674 SNP Detail

Summary

• ID
  rs31769674
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37610563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACTAAAAG TAGATAAATC CCCAAATCTT CAGTTACTAG
  AAACATACAT GCAAACACAT GTATATATTT CTTGCAAATA TTTTTCCTTA CAGGTTGTGA
  W
  TTAAAAGCGT ATCTTTTGCC CCAAACGCAA TAAGAATTAT TGAATCATTA CTCTCCAGCA
  ATGACATTTC TCTTGTGTGA CCTTCAGGAA GTTGTCTGCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49274178	NES12728346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31769674					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274178	NES12728346	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37610563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	1892 bp distal
Cpgi9915	CpG island 9915	1939 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	1170 bp downstream
Pcdhb16	protocadherin beta 16	304 bp upstream
Rr536278	regulatory region 536278	161 bp proximal
Rr536279	regulatory region 536279	213 bp proximal
Rr536280	regulatory region 536280	315 bp proximal
Tssr5286	transcription start site region 5286	336 bp upstream
Tssr150708	transcription start site region 150708	295 bp upstream