rs31769676 SNP Detail

Summary

• ID
  rs31769676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCGAAAGC ACAGGGAGAG
  AAATAGAATA AAAGCTAAAC CCTTCTGCCC ATGGATGAAG CTCTAATGTA AACTATACCC
  TTGTTGTGTA ATGAAGAATG ATTTCATGTT AACATCTAGA AGTTAACTAA TTTAGGACAG
  AAAAGAATAC CTGTATTTAT TCCCAAAAAC CTTTTCTTTA ATTTATGAAA TGCATGTGTT
  S
  TGTGCTATCT CAAATCTAAT TTGATTTCTC TTTGTTTTTT AAGATTTGTT GAACTGCAAT
  CTATTAAACA ACAAATCTTG GTAGAGATTG TTTAAGCTGT TTTTCCATAT CTACATTTTT
  CATTTATAAT TATGTTCTGA GTCTATTGGA ATTACATATA AATGTAGACA TACCCTACAT
  TTGAGAGGTT ATATTATATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49274184	NES12728540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31769676					SNP	G	G	G	G	G	G	C	G	G	C	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274184	NES12728540	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	629 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	within coordinates
Pcdhb16	protocadherin beta 16	1567 bp upstream
Rr536278	regulatory region 536278	1424 bp proximal
Rr536279	regulatory region 536279	1476 bp proximal
Rr536280	regulatory region 536280	1578 bp proximal
Tssr5286	transcription start site region 5286	1599 bp upstream
Tssr150708	transcription start site region 150708	1558 bp upstream