rs31769899 SNP Detail

Summary

• ID
  rs31769899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:42300020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC TCCCTCAGAG ATGAAGGACA
  Y
  ATAACATACT CTTCAGGACC CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45069002	mCV25452424	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C
ss47278619	NES11102289	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		C	C	T	C		C	C	C		T
ss149000255	ENSMUSSNP6346592	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss319701927	CHEV_1_42317705	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31769899					SNP	C	C	T	T	C	C	T	C	C	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47278619	NES11102289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:42300020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi200	CpG island 200	1096 bp proximal
Gm28175	predicted gene 28175	within coordinates
Gm70195	predicted gene, 70195	1813 bp downstream
Rr410203	regulatory region 410203	1891 bp distal
Rr410204	regulatory region 410204	1045 bp distal
Rr410205	regulatory region 410205	within coordinates
Rr410206	regulatory region 410206	813 bp proximal
Rr410207	regulatory region 410207	1079 bp proximal
Rr410208	regulatory region 410208	1842 bp proximal
Tssr6506	transcription start site region 6506	1050 bp downstream
Tssr6507	transcription start site region 6507	1063 bp upstream