rs31770250 SNP Detail

Summary

• ID
  rs31770250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:175460157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAATATAT TTGCTATAAA
  TATGGTATTG CTTTTCACTA CAGTTATTAA TACACACTGA TCGCTGACAT TTCTATGAAT
  ACCATGTCCA GTACTGATTA TGTCTCTCTA CCCTTCCACA CTCTTCCGTC TCCCACATCT
  CCTCAGTCTC TCTTAAAATT TTAGGTCTTC TTTCTTCTTC TTCTCTCCCT CTCTTACCTC
  Y
  CCCCACCCCA TGTATGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGCGCG CGCGCGCGCG
  CGCGCGAGTA ATTTCCATAC GTGACAGAAA ATATGCAGAA CTTGTCTTAT GTATTTATAT
  CTCACTTATC CCAATGTCCT CCAAATCCAC TCATTCTTAC TGAGATGACC TAAGACACAT
  TTTTGTTTTT AAATAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45068341	mCV22956912	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss320151893	CHEV_1_177562722	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31770250					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175460157 () rs orientation: forward

Symbol	Name	Function Class
Kmo	kynurenine 3-monooxygenase	within coordinates
Rr396618	regulatory region 396618	472 bp downstream
Tssr10313	transcription start site region 10313	613 bp downstream
Tssr10314	transcription start site region 10314	590 bp downstream
Tssr10315	transcription start site region 10315	567 bp downstream
Tssr10316	transcription start site region 10316	534 bp downstream
Tssr10317	transcription start site region 10317	497 bp downstream
Tssr10318	transcription start site region 10318	490 bp downstream
Tssr10319	transcription start site region 10319	480 bp downstream
Tssr10320	transcription start site region 10320	458 bp downstream
Tssr10321	transcription start site region 10321	440 bp downstream
Tssr10322	transcription start site region 10322	431 bp downstream
Tssr10323	transcription start site region 10323	406 bp downstream