rs31770269 SNP Detail

Summary

• ID
  rs31770269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65139441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT GCACCGTCCC ATAAGTACTG
  Y
  TTCCTGACTG GAAGGAAGTG AGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45068902	mCV24808399	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss60744605	NES16381376	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	T		T	T	T	T		T	T	T	T		T
ss149170476	ENSMUSSNP5662430	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss319746473	CHEV_1_65146856	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31770269					SNP	T	T	T	C	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744605	NES16381376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65139441 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	111 bp downstream
Gm28845	predicted gene 28845	337 bp downstream
Tssr102	transcription start site region 102	366 bp upstream
Tssr7112	transcription start site region 7112	111 bp upstream
Tssr7113	transcription start site region 7113	226 bp upstream
Tssr7114	transcription start site region 7114	236 bp upstream
Tssr7115	transcription start site region 7115	252 bp upstream
Tssr7116	transcription start site region 7116	313 bp upstream
Tssr7117	transcription start site region 7117	341 bp upstream
Tssr7118	transcription start site region 7118	371 bp upstream
Tssr11968	transcription start site region 11968	141 bp downstream
Tssr11969	transcription start site region 11969	171 bp downstream
Tssr11970	transcription start site region 11970	345 bp downstream
Tssr11971	transcription start site region 11971	368 bp downstream
Tssr11972	transcription start site region 11972	390 bp downstream