rs31771101 SNP Detail

Summary

• ID
  rs31771101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179787187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTGGAGCG GCTGTCTTGT CTTAGAGCGG TTGGAAGCCG
  AGGGTACCCT TGCGGGACCG ACGGCATCTC CGCAGAAGTG GAGGAAGAAG GCCGGCTGGG
  R
  GGTGGTCACC GCGGGGACCC CGGGCGGCGG CGAGGCACCG TGGCGCAGTT CCCAGCCCGT
  GCCTCACCGA GCCAACCCGT TCCACACCCG AGTCGCCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45068226	mCV24651993	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31771101					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179787187 () rs orientation: forward

Symbol	Name	Function Class
Cdc42bpa	CDC42 binding protein kinase alpha	850 bp upstream
Cpgi1100	CpG island 1100	within coordinates
Rr29078	regulatory region 29078	within coordinates
Tssr10433	transcription start site region 10433	350 bp upstream
Tssr10434	transcription start site region 10434	362 bp upstream
Tssr10435	transcription start site region 10435	1152 bp upstream