rs31772013 SNP Detail

Summary

• ID
  rs31772013
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49105192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCCTGT CTTAAAATTA
  AAATAAATTT AAAAGCCTAC ATTTTGCTTT GTTCTGCTTA GTAAAAAATG TCTGTTGACA
  GTTCACTGCA TTGATGTAAA AAGAATTTTC ACATACCATA AAAACCAAAA TAACTTTTAT
  ATTACCTTTT CCTATTATTA TGTGTATAAC CAACATACAG CTTACGTTGA ATACTTTTAT
  W
  ATGTGGTCAA TTTATAGAAT AGTCTTTTAA TATGGACAGC ACTAAAAAAC CACATGCTAA
  TTCTTTACAA GTTCTTGCCA ATCTTTTTTT TTTACCATTT TATAACTGCA TAAATGTATA
  GAAGATGCTT TGACCTAATC AACCCTCTAT TATCTCTCCT CCAATCCATG TCAAGCCTGT
  ATTATTTTTC CATCCCTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47087754	NES11252795	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31772013					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47087754	NES11252795	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49105192 () rs orientation: forward

Symbol	Name	Function Class
Rr263627	regulatory region 263627	1008 bp distal