rs31772315 SNP Detail

Summary

• ID
  rs31772315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:125672431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agattttct tgattaataa ttgatgtgga
  atgacccctt ccattgtggg cagtgccacc cttgggcagg cagtatgggt tgtacaTGTA
  TCTTACTACT TCAGCTAGTC CAATTAGAAA CTCTTTCACC AATATTCCCA GGTCTCTGGA
  R
  ATCCTGTCAA ATGGGTAACA AGTGTTAACC ATCACATTCC TTGTAGCTTG TTCAGCGTAT
  AGCAAGGATA TTTATTTGTT AGTACTCCAA TAAAGAGGCA GAAATGGTGG GGAAAGACAG
  TGCTGGGATC ACTGTTTGCC TCTTTTGTTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45069123	mCV23282437	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G
ss51355470	NES14487758	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A		A	A	G	G		A	G	G	A		G
ss145412491	ENSMUSSNP6314196	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss319956349	CHEV_1_127641271	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31772315					SNP	A	A	A	A	A	A	A	G	A	A	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355470	NES14487758	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:125672431 () rs orientation: forward

Symbol	Name	Function Class
Gpr39	G protein-coupled receptor 39	within coordinates
Rr371980	regulatory region 371980	within coordinates