rs31772393 SNP Detail

Summary

• ID
  rs31772393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA CAACAGGAGC TGGACATGAT
  R
  GCACATGACT TTAATCTCAG AACTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39324339	mCV25425677	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss148229766	ENSMUSSNP2570839	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss325033190	CHEV_15_81858123	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31772393					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911894 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	within coordinates
Tssr132336	transcription start site region 132336	332 bp upstream
Tssr132337	transcription start site region 132337	361 bp upstream
Tssr132338	transcription start site region 132338	396 bp upstream
Tssr132339	transcription start site region 132339	418 bp upstream
Tssr132340	transcription start site region 132340	815 bp upstream
Tssr132341	transcription start site region 132341	1510 bp upstream
Tssr135523	transcription start site region 135523	156 bp downstream
Tssr135524	transcription start site region 135524	1893 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates