rs31772421 SNP Detail

Summary

• ID
  rs31772421
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113414532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAAATTATA CTTAAAAGGT CCAAAACACA GCTTGGCAGA CTCCCGGTTC CCTGTTCCCT
  CTGTTCATTG GCCATCTGAA AGTCCAACTT ATAAAAGACT GACTATGGAA GAGAAAGTAG
  CATATGAGGT CCCACAGACA AGTGACACTT TATCCAAAGA TGCCTGGAAC TGTTCCATAT
  TCCTGCACCC TAAGAAACAG ACAGGTGAGA TGCATGGCTA AAGCCAGGCT TGTGCTGCCT
  CAGCCTCACG TGTCTCTCAT TTACTCCTCA TCCTTCTAGA GTATTGGGCT TGGGGGGGGG
  S
  GGGGATCCTA TAACATGGAG AGAGTCAGGT GGACCGTCAA GGCTCTGGGG TAGAGTGGGC
  TCTACAAGTC TAGAGGATTG GGGCTTGACA GGTAAGACAA AGCACAATGG GAGGTACTGC
  CTAAGAATTT GGCAGGGACC AACCAGGCAG AGAACTCTGA GATGACATTG TAACGACTGT
  TGTGTGTGCC ACCGAAAGCC TCTGGAAGTC TAACCCAGGA AATGACGAGC TTGGGTTCCA
  AGGGAAGATG AAATGCAGGG GGTTTGTATG GATGCAGGAG ATAACATCAG AAGTTACTGC
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46067703	mCV23606263	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31772421					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113414532 () rs orientation: forward

Symbol	Name	Function Class
Rr653873	regulatory region 653873	650 bp distal
Rr653874	regulatory region 653874	1593 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr74335	transcription start site region 74335	1682 bp downstream