rs31772460 SNP Detail

Summary

• ID
  rs31772460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44841048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTTTAA TACCAGGCCA
  GCCTGGGCTA TATAACAAGA CCTCATCTTA AAAAACAAAA ACAAAGCTGG GCAGTGGTGG
  CACATGCCTT TAATGCCAGC ACTCAGAAGG CAGAGGCAGG CAAACCTCTG AGTTCGAGGC
  CAGCCTGATC TATAGAGCAA GTTCCAGGAC AGCCAGGGTT ACACAGAGAA GACCTGTCTT
  R
  AACAAACAAA TGAGCAAACA AACAAACAAA TGAATATGAC AATTCCAAGT CCAAGGTTCC
  AGGCACCTGA AGTCTAGCAA GCCACATCCT CCTCCAGAGC CCAGGAGACG AGGCCAGTAG
  CTCTTTGGTA TCTAGCCCCA TCCCTGCTCC CGGTCACCAG TGCGTCATTC ATCTCAGCAG
  CTCGGGCTGC TGGGTGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46067084	mCV27567987	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss149131093	ENSMUSSNP7050498	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31772460					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44841048 () rs orientation: forward

Symbol	Name	Function Class
Gm31097	predicted gene, 31097	480 bp downstream
Kash5	KASH domain containing 5	within coordinates
Rr646366	regulatory region 646366	77 bp proximal
Rr646367	regulatory region 646367	1590 bp proximal
Tssr72336	transcription start site region 72336	1974 bp upstream
Tssr72337	transcription start site region 72337	1911 bp upstream
Tssr72338	transcription start site region 72338	1815 bp upstream