rs31772539 SNP Detail

Summary

• ID
  rs31772539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191572652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG TGCGTGTGTC TGCTCGTGTG
  Y
  GTGTGTCTTT GTGTGTGCAT GAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45068637	mCV23985182	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss146511024	ENSMUSSNP1209570	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320196175	CHEV_1_193664419	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31772539					SNP	T	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191572652 () rs orientation: forward

Symbol	Name	Function Class
Rr426235	regulatory region 426235	403 bp distal
Rr426236	regulatory region 426236	496 bp distal
Rr426237	regulatory region 426237	within coordinates