rs31772616 SNP Detail

Summary

• ID
  rs31772616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49105205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTAAAA TAAATTTAAA
  AGCCTACATT TTGCTTTGTT CTGCTTAGTA AAAAATGTCT GTTGACAGTT CACTGCATTG
  ATGTAAAAAG AATTTTCACA TACCATAAAA ACCAAAATAA CTTTTATATT ACCTTTTCCT
  ATTATTATGT GTATAACCAA CATACAGCTT ACGTTGAATA CTTTTATAAT GTGGTCAATT
  W
  ATAGAATAGT CTTTTAATAT GGACAGCACT AAAAAACCAC ATGCTAATTC TTTACAAGTT
  CTTGCCAATC TTTTTTTTTT ACCATTTTAT AACTGCATAA ATGTATAGAA GATGCTTTGA
  CCTAATCAAC CCTCTATTAT CTCTCCTCCA ATCCATGTCA AGCCTGTATT ATTTTTCCAT
  CCCTTTATGA GTTCTGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47087757	NES11252796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31772616					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47087757	NES11252796	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49105205 () rs orientation: forward

Symbol	Name	Function Class
Rr263627	regulatory region 263627	1021 bp distal