rs31772809 SNP Detail

Summary

• ID
  rs31772809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39404158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCTCCT GCAGTTCTTT TTTTTttttt
  ttctttcgag acagggtttc tctgtgtagc cctggctgtc ctggaactca ctctgtagac
  caggctggcc ttgaactcag aaatccacct gcctctgcct cccaagtgct gggactaaag
  R
  tgtgcaccac cactgcccgg cCTGCAGTTC TAAGATATGT TCCAGCAAGT TCAACCACAA
  AAGGGGAGTC ACCAGAGGTT GCTAGGGAGT TAGTTGAGGG TATAAGAATT GACTAGCCAC
  TTTGTTTGGA GAAGGTTGTG CACGGAACTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45068743	mCV23411404	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss148967755	ENSMUSSNP2302331	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
ss319695453	CHEV_1_39421922	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31772809					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39404158 () rs orientation: forward

Symbol	Name	Function Class
Gm53549	predicted gene, 53549	within coordinates
Npas2	neuronal PAS domain protein 2	1837 bp downstream
Rr29345	regulatory region 29345	1842 bp proximal