rs31773667 SNP Detail

Summary

• ID
  rs31773667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACGAGGC CTGTAAACAG
  CCGCTTCATA GCACTGCCTC GCCTCATCCT GCAGCTCCTC CATGCAGGCT TGTGCCCTGG
  GTGCCCAGTC TCACCTAGAA AAGCACTGGT GCCTCAGATC CATAGGCTTC ACGGGGGAGA
  AAAATAAGAC ACGGATCTAT GACTGACAAG GGGTCATTCA CAGGTCAGAC AGCTTACAGA
  Y
  TTGAACCTGG GCAGCCGAGG TCCCACGGTC TGTTCAGGCC AAGGCTGGGA ATGTTAAAAG
  TTCTCCAGCT AAGGCAGGGA GCTCATACCC CTCCTTAGCA GGCAGGCTGG GAGTGGCCAG
  TGAGCCTTTT ATTGGGTGTC CCTTTTGTGG ATTAGATGCT TGACCAGAAG GTGGGACTTG
  GATGCTCAGA GGACACGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48087327	NES12084286	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T		C	C	C	C		T
ss148254545	ENSMUSSNP5848763	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss325039417	CHEV_15_84532902	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31773667					SNP	T	T	C	T	C	T	C	T	T	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087327	NES12084286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586673 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	1473 bp distal
Rr304870	regulatory region 304870	73 bp distal
Rr304871	regulatory region 304871	1128 bp proximal
Rr314876	regulatory region 314876	1617 bp distal
Rr314877	regulatory region 314877	within coordinates
Rr404546	regulatory region 404546	131 bp downstream