rs31773669 SNP Detail

Summary

• ID
  rs31773669
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGGTGC CCAGTCTCAC
  CTAGAAAAGC ACTGGTGCCT CAGATCCATA GGCTTCACGG GGGAGAAAAA TAAGACACGG
  ATCTATGACT GACAAGGGGT CATTCACAGG TCAGACAGCT TACAGATTTG AACCTGGGCA
  GCCGAGGTCC CACGGTCTGT TCAGGCCAAG GCTGGGAATG TTAAAAGTTC TCCAGCTAAG
  R
  CAGGGAGCTC ATACCCCTCC TTAGCAGGCA GGCTGGGAGT GGCCAGTGAG CCTTTTATTG
  GGTGTCCCTT TTGTGGATTA GATGCTTGAC CAGAAGGTGG GACTTGGATG CTCAGAGGAC
  ACGTGGGCTG GCACCCACCA TCTTAGTGTA TGACTGTGTC TGTTCCTGCA GAGAAACGAT
  TCCTACGCCG CTCCCGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48087329	NES12084287	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	G	G		A	A	A	A		G
ss148254550	ENSMUSSNP3118917	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss325039418	CHEV_15_84532976	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31773669					SNP	G	G	A	G	A	G	A	G	G	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087329	NES12084287	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586747 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	1547 bp distal
Rr304870	regulatory region 304870	147 bp distal
Rr304871	regulatory region 304871	1054 bp proximal
Rr314876	regulatory region 314876	1691 bp distal
Rr314877	regulatory region 314877	within coordinates
Rr404546	regulatory region 404546	205 bp downstream