rs31773671 SNP Detail

Summary

• ID
  rs31773671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTGAAC CTGGGCAGCC
  GAGGTCCCAC GGTCTGTTCA GGCCAAGGCT GGGAATGTTA AAAGTTCTCC AGCTAAGGCA
  GGGAGCTCAT ACCCCTCCTT AGCAGGCAGG CTGGGAGTGG CCAGTGAGCC TTTTATTGGG
  TGTCCCTTTT GTGGATTAGA TGCTTGACCA GAAGGTGGGA CTTGGATGCT CAGAGGACAC
  R
  TGGGCTGGCA CCCACCATCT TAGTGTATGA CTGTGTCTGT TCCTGCAGAG AAACGATTCC
  TACGCCGCTC CCGCTCTGGG GATATCCTAG CCAAGAACCC AGTGGTGCGC TCCAAAAGCT
  ACAACACTCC CCTGCTCAAT CCTGTGGCCG AGCATGAAGC AGAAGGCACA GCAGCCAGCG
  GCACGAGCAT CCGCAGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss48087331	NES12084288	PERLEGEN	MM_PANEL2	f	SNP	G			A	G	G		G	A		G
ss148254563	ENSMUSSNP2640063	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			G
ss325039420	CHEV_15_84533099	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs31773671					SNP	G	G	A	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087331	NES12084288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586870 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	1670 bp distal
Rr304870	regulatory region 304870	270 bp distal
Rr304871	regulatory region 304871	931 bp proximal
Rr314876	regulatory region 314876	1814 bp distal
Rr314877	regulatory region 314877	71 bp distal
Rr404546	regulatory region 404546	328 bp downstream