rs31774216 SNP Detail

Summary

• ID
  rs31774216
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92287823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCTGG AGCAGCGAGA
  GGTCAAGCCT CCTCACTCTC CGCTCAGCAA AGTGACTTGT GCAGTTGGTA CTGCGGAGCT
  GGAGCTGGGA TGCTTGGTTC AGTGTGCATG GATCAGTATC ATAGTTTTAC ATCATGACTT
  TATACTGATG CCCAGTGTCA CCGTGGTGAA CATGTAAAGA GAGACGAGAG GGATGCCCTT
  K
  TACTTCACTG GCTCTGAGAA CTGAATCAGT AGTCTGTCTT TTGAGGACCG AGGTCACTGA
  GTTACTGTAT GATCAAAGTT AGTTCTGAGT CTGTCGGGAA GTCCAGCAGG GCTCACGGGC
  CACTAGTTGA CATGGATTTA TAGAGCCTCA GTGGAGTGCA TGGTGTACTA TTAGGTGCTT
  TAATTGTCCA TATTTGATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46602706	NES10433406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31774216					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46602706	NES10433406	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92287823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	1321 bp distal
Gm15710	predicted gene 15710	330 bp downstream
Rr399160	regulatory region 399160	1918 bp downstream
Rr614573	regulatory region 614573	1267 bp distal
Tssr47286	transcription start site region 47286	1990 bp downstream
Tssr51849	transcription start site region 51849	1001 bp downstream
Uso1	USO1 vesicle docking factor	within coordinates