rs31774478 SNP Detail

Summary

• ID
  rs31774478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165468630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCAAGAA ATTATGGGAG TCAAGTGTTG CAACTCAGGC
  CCGGTTTGAT GAATGCTTTT AAATAAATTA AATTAAAAAT ATAAAAATCA CAGCCATTGC
  R
  AGGCAGAATT CGGTGGGGTT CTGTGAGTTG TGTCCAGCCT GGTCTACATA GTGAGTTCCA
  GACTACTGAA GATTGTATAG TGAGACTATA CTCTAGTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45068961	mCV23519521	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss146003986	ENSMUSSNP5353781	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31774478					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165468630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	761 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	573 bp upstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	1210 bp downstream
Rr396497	regulatory region 396497	317 bp upstream
Rr396498	regulatory region 396498	1022 bp upstream
Rr422408	regulatory region 422408	502 bp proximal
Rr422409	regulatory region 422409	596 bp proximal