rs31775190 SNP Detail

Summary

• ID
  rs31775190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTAGAAT CCTGTTCTGT
  GCAGTCCTGG GGATCACACG AAGAGTTTTG CCTGAGCTTA GACTTCGCTT GCTTTCGCTT
  ATTCGTTCAT TTTTTGGCGC AGGGTCTCCC TTTGTACCCG AGACTGGTCT TGAACTGGCT
  ACATAGCTGA GGGGCCTCAA ACTCATCCTC CTGATTCCAC CTCCTAGACC ACAGATGTGC
  R
  CGCACATCAC AAAGGAGTGA TGAATCTACT TTGACGGAGC TTACTTGTGT GTGTGAGGCA
  GGACAGGTAC TGTACTAGGA GTTGAACCCA AAGGATTTAC ACATGCTAGA AAGTTGTTCT
  GCTTCTGAGC AGTCCCTTAT CTTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTTATGC ATGTGGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45068871	mCV24421014	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss119997568	PARCsnp_1.01053	PARC_SEQ	INBRED	f	SNP			G	A
ss146156101	ENSMUSSNP1077155	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31775190					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018597 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	141 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1357 bp distal
Rr423237	regulatory region 423237	943 bp distal
Rr423238	regulatory region 423238	682 bp distal