rs31775438 SNP Detail

Summary

• ID
  rs31775438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100946058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG TTTTGTGAAC CAGTCCCCTA
  K
  CCACAGCTAC CTATACGCCT GTAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39324188	mCV25401751	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss148481925	ENSMUSSNP4689603	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
ss325085116	CHEV_15_100878608	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31775438					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100946058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	565 bp distal
Rr509881	regulatory region 509881	1329 bp distal
Rr509882	regulatory region 509882	290 bp distal
Tmdd1	transmembrane and death domain 1	780 bp upstream
Tssr136507	transcription start site region 136507	801 bp upstream
Tssr136508	transcription start site region 136508	792 bp upstream
Tssr136509	transcription start site region 136509	773 bp upstream
Tssr136510	transcription start site region 136510	748 bp upstream