rs31775772 SNP Detail

Summary

• ID
  rs31775772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92469694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGACTG TGCAATGTTG
  TTTGGATGGG AGTCCCACCA GCAGCACAAA AACCACCTGC ATGCAGCGCC AGGAATGGCA
  GTATTTGAGA AAAAGCATGC TCAAGACGGA ACTTCTGCCC AGAGACATTC TTTTCTATCT
  AATTCATCAG ACCTCCTCTC TAGAGCAGTT TCCAGCTCCC ACACAGGCTA ACTTGGCCCT
  R
  TCCACACTTC CACTCGCAGA ATTTACTGCT TCCTGTAGCT CTTAATTCCT TTAAAAATAT
  CTCTGTAAAG ATTTTTATTT GCCGTCTGAG ATTATGGGTG TATGTCATGG GGGCCTGTGT
  ACACCTGTGC AATGCTTGCA GAGGCCAGAA GAGAGAAATG GGTTCCCTGG AGCTGGAGTC
  ACAGGTGGCC ACAAGGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46603447	NES10422554	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31775772					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603447	NES10422554	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92469694 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	within coordinates
Rr614603	regulatory region 614603	1412 bp proximal
Tssr47287	transcription start site region 47287	1149 bp upstream
Tssr47288	transcription start site region 47288	1932 bp upstream
Tssr47289	transcription start site region 47289	1949 bp upstream
Tssr47290	transcription start site region 47290	1961 bp upstream
Tssr51864	transcription start site region 51864	897 bp downstream
Tssr51865	transcription start site region 51865	975 bp downstream
Tssr51866	transcription start site region 51866	1264 bp downstream
Tssr51867	transcription start site region 51867	1856 bp downstream
Tssr51868	transcription start site region 51868	1912 bp downstream
Tssr51869	transcription start site region 51869	1958 bp downstream
Tssr51870	transcription start site region 51870	2000 bp downstream