rs31775773 SNP Detail

Summary

• ID
  rs31775773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92470172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGATGT GGCAATCCAT
  ACAATCATAC ACTGGGATTT CTGCAATGAG GGAGGGAAGG TGGCAAGGAA ATTCATATTC
  ACCTAAGATA AACTTGCTAA AGGATTTGGC AGCTCTTTTG TTGACTCCTA GGGAGCTTGT
  CCTGATCAAG AATGATATTA GAGGAATTTT GTTTTGAGTG AGGAAAGATC TAGTATTTGC
  Y
  AATCAGTCAA ACCTGTCTTC CATGTAAGCT TATGTTTCTA GATGGCCTGT GTAATTTTTC
  CTGAGCAGTC CCAAATATCC GCAAATGTCT TGAACATGTG ATTCCTGTTT GTTAAAGACA
  CGAGCCTCCT GTCACAAGGT AAGGCTCTTT TTCACCCTGT CTGGCTCTGT GCGCTGAAGA
  TGTCTGAAGA TAATAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603448	NES10422474	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31775773					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603448	NES10422474	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92470172 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr47287	transcription start site region 47287	671 bp upstream
Tssr47288	transcription start site region 47288	1454 bp upstream
Tssr47289	transcription start site region 47289	1471 bp upstream
Tssr47290	transcription start site region 47290	1483 bp upstream
Tssr47291	transcription start site region 47291	1524 bp upstream
Tssr51864	transcription start site region 51864	419 bp downstream
Tssr51865	transcription start site region 51865	497 bp downstream
Tssr51866	transcription start site region 51866	786 bp downstream
Tssr51867	transcription start site region 51867	1378 bp downstream
Tssr51868	transcription start site region 51868	1434 bp downstream
Tssr51869	transcription start site region 51869	1480 bp downstream
Tssr51870	transcription start site region 51870	1522 bp downstream
Tssr51871	transcription start site region 51871	1556 bp downstream