rs31776614 SNP Detail

Summary

• ID
  rs31776614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92470744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTAGGCA ATTTGGAGCA GCCGGGGATT GGCCAATGCC
  TGGTGTGTAA CAGCCTTTCT ACCTCTCACA CATACAATTA GGAAATTATT CAAAACCAAG
  Y
  TTTTGTAGGC ACTGTGGAAG ATTTAGGGGA ATAGTCTGTG GTCCCTACTC TTAAAAACCC
  GTCTCGTTGG AAAAAGTAAA ACAAACAAAC AAACAAATCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603449	NES10422430	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	T	C	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776614					SNP	T	T	C	C	C	T	C	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603449	NES10422430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92470744 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	698 bp distal
Rr614603	regulatory region 614603	362 bp proximal
Tssr47287	transcription start site region 47287	99 bp upstream
Tssr47288	transcription start site region 47288	882 bp upstream
Tssr47289	transcription start site region 47289	899 bp upstream
Tssr47290	transcription start site region 47290	911 bp upstream
Tssr47291	transcription start site region 47291	952 bp upstream
Tssr51864	transcription start site region 51864	143 bp upstream
Tssr51865	transcription start site region 51865	59 bp upstream
Tssr51866	transcription start site region 51866	214 bp downstream
Tssr51867	transcription start site region 51867	806 bp downstream
Tssr51868	transcription start site region 51868	862 bp downstream
Tssr51869	transcription start site region 51869	908 bp downstream
Tssr51870	transcription start site region 51870	950 bp downstream
Tssr51871	transcription start site region 51871	984 bp downstream