rs31776616 SNP Detail

Summary

• ID
  rs31776616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92471244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCTGAA GATGGGATCA
  AGTTAATAAT GAAATCCCAT GGTCTCGAAA GCTACGTGGG AGGTTCTGAA GGCCAACTCT
  GGTGGTCTCC ACTGTAGAAC CCCAAAACCA TTAGCACCAT CTCTGAGACA CAATGTGTGC
  AGGGGCTCTA GGCTGACCCA AATGCAGCTG CCGAGGGCCT CTCCAGCTTG GTGAGGTCTA
  Y
  CTAGCTCACC AGCAAACAGA CAGGCCTGGG ATTTGGTGAC GTGAGCCTCA GAAGTCTTCG
  GAGGCTGCCA AATGTGTGGC TCTGGAAGCC AGACAGCTGT TGTGCATTGG ATAGCTATGA
  AGGAAAGGGA CACTTGCCCA GATCTGATGT TATCACGACT AGGCTCAAGG GCGTGATGAA
  ATTTTGTTGG CTGTGTAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603451	NES10422432	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776616					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603451	NES10422432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92471244 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Tssr47287	transcription start site region 47287	394 bp downstream
Tssr47288	transcription start site region 47288	382 bp upstream
Tssr47289	transcription start site region 47289	399 bp upstream
Tssr47290	transcription start site region 47290	411 bp upstream
Tssr47291	transcription start site region 47291	452 bp upstream
Tssr47292	transcription start site region 47292	1732 bp upstream
Tssr51864	transcription start site region 51864	643 bp upstream
Tssr51865	transcription start site region 51865	559 bp upstream
Tssr51866	transcription start site region 51866	279 bp upstream
Tssr51867	transcription start site region 51867	306 bp downstream
Tssr51868	transcription start site region 51868	362 bp downstream
Tssr51869	transcription start site region 51869	408 bp downstream
Tssr51870	transcription start site region 51870	450 bp downstream
Tssr51871	transcription start site region 51871	484 bp downstream
Tssr51872	transcription start site region 51872	1727 bp downstream