rs31776617 SNP Detail

Summary

• ID
  rs31776617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92471276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA GCAAACAGAC AGGCCTGGGA
  Y
  TTGGTGACGT GAGCCTCAGA AGTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46603452	NES10422433	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	C	C	C	C	C	T		C	T	T	C		C
ss148831402	ENSMUSSNP2251407	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321612237	CHEV_5_92752443	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31776617					SNP	T	T	T	C	C	C	C	C	C	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603452	NES10422433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92471276 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	1230 bp distal
Rr614603	regulatory region 614603	within coordinates
Tssr47287	transcription start site region 47287	426 bp downstream
Tssr47288	transcription start site region 47288	350 bp upstream
Tssr47289	transcription start site region 47289	367 bp upstream
Tssr47290	transcription start site region 47290	379 bp upstream
Tssr47291	transcription start site region 47291	420 bp upstream
Tssr47292	transcription start site region 47292	1700 bp upstream
Tssr51864	transcription start site region 51864	675 bp upstream
Tssr51865	transcription start site region 51865	591 bp upstream
Tssr51866	transcription start site region 51866	311 bp upstream
Tssr51867	transcription start site region 51867	274 bp downstream
Tssr51868	transcription start site region 51868	330 bp downstream
Tssr51869	transcription start site region 51869	376 bp downstream
Tssr51870	transcription start site region 51870	418 bp downstream
Tssr51871	transcription start site region 51871	452 bp downstream
Tssr51872	transcription start site region 51872	1695 bp downstream