rs31776619 SNP Detail

Summary

• ID
  rs31776619
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:92471352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTAGCACC ATCTCTGAGA
  CACAATGTGT GCAGGGGCTC TAGGCTGACC CAAATGCAGC TGCCGAGGGC CTCTCCAGCT
  TGGTGAGGTC TATCTAGCTC ACCAGCAAAC AGACAGGCCT GGGATTTGGT GACGTGAGCC
  TCAGAAGTCT TCGGAGGCTG CCAAATGTGT GGCTCTGGAA GCCAGACAGC TGTTGTGCAT
  K
  GGATAGCTAT GAAGGAAAGG GACACTTGCC CAGATCTGAT GTTATCACGA CTAGGCTCAA
  GGGCGTGATG AAATTTTGTT GGCTGTGTAG AACACAGAGT TTTTGCCTCT AGCAATTGTT
  ACTATTGGAG TTTTGCAATT AACTTCCTAA AGTTAGTTAT AATTTCAAAT TAACACTTTA
  TGTTTTGTAG TTGAGTTAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46603454	NES10422435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31776619					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46603454	NES10422435	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92471352 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	mRNA-UTR
Rr614602	regulatory region 614602	1306 bp distal
Rr614603	regulatory region 614603	within coordinates
Tssr47287	transcription start site region 47287	502 bp downstream
Tssr47288	transcription start site region 47288	274 bp upstream
Tssr47289	transcription start site region 47289	291 bp upstream
Tssr47290	transcription start site region 47290	303 bp upstream
Tssr47291	transcription start site region 47291	344 bp upstream
Tssr47292	transcription start site region 47292	1624 bp upstream
Tssr51864	transcription start site region 51864	751 bp upstream
Tssr51865	transcription start site region 51865	667 bp upstream
Tssr51866	transcription start site region 51866	387 bp upstream
Tssr51867	transcription start site region 51867	198 bp downstream
Tssr51868	transcription start site region 51868	254 bp downstream
Tssr51869	transcription start site region 51869	300 bp downstream
Tssr51870	transcription start site region 51870	342 bp downstream
Tssr51871	transcription start site region 51871	376 bp downstream
Tssr51872	transcription start site region 51872	1619 bp downstream